Publications

Publications

Sobolev A, Stoewer A, Leonhardt AP, Rautenberg PL, Kellner CJ, Garbers C, Wachtler T (2014) Integrated platform and API for electrophysiological data. Front. Neuroinform. 8:32.

Sobolev A, Stoewer A, Pereira M, Kellner CJ, Garbers C, Rautenberg PL and Wachtler T (2014). Data management routines for reproducible research using the G-Node Python Client library. Front. Neuroinform. 8:15.

Garcia S, Guarino D, Jaillet F, Jennings TR, Pröpper R, Rautenberg PL, Rodgers C, Sobolev A, Wachtler T, Yger P and Davison AP (2014). Neo: an object model for handling electrophysiology data in multiple formats. Front. Neuroinform. 8:10.

Jezek P, Moucek R, Le Franc Y, Wachtler T, Grewe J (2013) Framework for automatic generation of graphical layout compatible with multiple platforms. In: Visual Languages and Human-Centric Computing (VL/HCC), 2013 IEEE Symposium on, pp. 193-194.

Bakker R, Wachtler T and Diesmann M (2012) CoCoMac 2.0 and the future of tract-tracing databases. Front. Neuroinform. 6:30.

Grewe J, Wachtler T and Benda J (2011) A bottom-up approach to data annotation in neurophysiology. Front. Neuroinform. 5:16.

Rautenberg PL, Wachtler T (2011) Flexible specification of data models for neuroscience databases. Database and Expert Systems Applications 2011, pp. 75-78. doi: 10.1109/DEXA.2011.35

Rautenberg PL, Sobolev A, Herz AV, Wachtler T (2011): A database system for electrophysiological data. In: A. Hameurlain et al. (Eds.): TLDKS IV, Lecture Notes in Computer Science 6990, p. 1-14.

Herz AVM, Meier R, Nawrot MP, Schiegel W, Zito T (2008) G-Node: An integrated tool-sharing platform to support cellular and systems neurophysiology in the age of global neuroinformatics. Neural Networks 21:1070-1075 [download pdf]

Abstracts

Stoewer A, Benda J, Garbers C, Kellner CJ, Sobolev A, Wachtler T and Grewe J (2013). Single-file solution for storing neuroscience data and metadata.. Front. Neuroinform. Conference Abstract: Neuroinformatics 2013. doi: 10.3389/conf.fninf.2013.09.00077

Bakker R, Tiesinga P, Diesmann M and Wachtler T (2013). Setting up a web-based neuroscience database has never been easier: The CoCoMac engine goes open source. Front. Neuroinform. Conference Abstract: Neuroinformatics 2013. doi: 10.3389/conf.fninf.2013.09.00099

Sobolev A, Stoewer A, Leonhardt A, Rautenberg P, Kellner C, Garbers C, Herz A, Wachtler T (2013) Web Data Storage for Management and Sharing of Neuroscience Data. Bernstein Conference 2013. doi: 10.12751/nncn.bc2013.0231

Sobolev A, Leonhardt AP, Kellner C, Rautenberg P, Herz AV and Wachtler T (2012). Cloud Services and a Data API for Electrophysiology. Front. Comput. Neurosci. Conference Abstract: Bernstein Conference 2012.

Garbers C, Kellner C, Mokrzycki L and Wachtler T (2012). Neuronal data storage using document oriented databases. Front. Comput. Neurosci. Conference Abstract: Bernstein Conference 2012.

Leonhardt AP, Sobolev A, Rautenberg PL, Garbers C, Kellner C, Herz AV and Wachtler T (2011). Novel tools and techniques for interacting with neurophysiological data. Front. Comput. Neurosci. Conference Abstract: BC11 : Computational Neuroscience & Neurotechnology Bernstein Conference & Neurex Annual Meeting 2011.

Sobolev A, Rautenberg P, Leonhardt A, Kellner C, Garbers C, Grewe J, Benda J, Herz A and Wachtler T (2011). Methods and Data Models for Neurophysiological Data Management. Front. Comput. Neurosci. Conference Abstract: BC11 : Computational Neuroscience & Neurotechnology Bernstein Conference & Neurex Annual Meeting 2011.

Sobolev A, Rautenberg P, Benda J, Grewe J, Herz A and Wachtler T (2011). Data management for Neurophysiology at the German INCF Node. Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics.

Grewe J, Sobolev A, Wachtler T and Benda J (2011). From recording to sharing of data - embedding metadata handling into the laboratory workflow using odML. Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics.

Sobolev A, Rautenberg P, Kellner C, Benda J, Grewe J, Nawrot MP, Schiegel W, Zito T, Herz AV and Wachtler T (2011). Neurophysiology data management for efficient analysis and collaborative work Göttingen Meeting of the German Neuroscience Society 2011.

Grewe J, Wachtler T and Benda J (2010). odML Format and Terminologies for Automated Handling of (Meta)data. Front. Neurosci. Conference Abstract: Neuroinformatics 2010.

Sobolev A, Rautenberg P, Benda J, Grewe J, Nawrot M, Schiegel W, Zito T, Herz A and Wachtler T (2010). Tools for Neurophysiology Data Management and Analysis at the German Neuroinformatics Node. Front. Neurosci. Conference Abstract: Neuroinformatics 2010.

Wachtler T, Nawrot MP, Benda J, Grewe J, Zito T, Schiegel W, Herz AVM (2009) Development of tools for data analysis and data sharing at the German Neuroinformatics node. 2nd INCF Congress of Neuroinformatics Pilsen, Czech Republic, September 6-8.

 

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